What can we improve? Workflows for learning and use. Note that we can't provide technical support on individual packages. The page or its content looks wrong. Xiuwen Zheng [aut, cre], Stephanie Gogarten [ctb], Jean-loup Gailly and Mark Adler [ctb] for the included zlib sources , Yann Collet [ctb] for the included LZ4 sources , xz contributors for the included liblzma sources Maintainer: Please read the posting guide. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory.
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Course and conference material. I can't find what I'm looking for.
Xiuwen Zheng [aut, cre], Stephanie Gogarten [ctb], Jean-loup Gailly and Mark Adler [ctb] for the included zlib sourcesYann Collet [ctb] for the included LZ4 sourcesxz contributors for the included liblzma sources Maintainer: The CoreArray project is to develop portable, scalable, bioinformatic data visualization and storage technologies. Community resources and tutorials. Related to gdsfmt-package in gdsfmt Description Details Author s References Examples.
Support site - for questions about Bioconductor packages Bioc-devel mailing list - for package developers.
gdsfmt: R Interface to CoreArray Genomic Data Structure (GDS) files
It is also allowed to gdsmt a GDS file in parallel with multiple R processes supported by the package parallel. We want your feedback! Gogarten, Cathy Laurie, Bruce S. Data compression and decompression are available with relatively efficient random access.
Post questions about Bioconductor to one of the following locations:. The gdsfmt package offers the efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism SNPusually occupies fewer bits than a byte.
For more information on customizing the embed code, read Embedding Snippets. DataImportInfrastructureSoftware. This package provides a high-level R interface to CoreArray Genomic Data Structure GDS data files, which are portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
What can we improve? Note that we can't provide technical support on individual packages.
Xiuwen Zheng [aut, cre], Stephanie Gogarten [ctb], Jean-loup Gailly and Mark Adler [ctb] for the included zlib sourcesYann Collet [ctb] for the included LZ4 sourcesxz contributors for the included liblzma sources. The page or its content looks wrong. Add the following code to your website. It is suited for large-scale datasets, especially for data which are much larger than the gcsfmt random-access memory.
Home Install Help Developers About. It is suited gdfsmt large-scale datasets, especially for data which are much larger than the available random-access memory. Identification and analysis of miRNA sponge interaction networks and modules.
You should contact the package authors for that. To view documentation for the version of this package installed in your system, start R and enter:. To support efficient data management in bdsfmt for numerical genomic data, we developed the Genomic Data Structure Hdsfmt file format.
For older versions of R, please refer to the appropriate Bioconductor release. It is also allowed to read a GDS file in parallel with multiple R processes supported by the parallel package.
CRAN - Package gdsfmt
R is the most popular statistical environment, but one not necessarily optimized for high performance or parallel computing which ease the burden of large-scale calculations.
Follow Installation instructions to use this package in your R session. Embedding an R snippet on your website. R Package Documentation rdrr. Workflows for learning and use.
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